ApolloΒΆ
Apollo - An instantaneous, collaborative, genome annotation editor.
The application’s technology stack includes a Grails-based Java web application with flexible database backends and a Javascript client that runs in a web browser as a JBrowse plugin.
You can find the latest release here: https://github.com/GMOD/Apollo/releases/latest and our setup guide: http://genomearchitect.readthedocs.io/en/latest/Setup.html
- Apollo general documentation: https://genomearchitect.github.io/
- JBrowse general documentation: http://jbrowse.org
Note: This documentation covers release versions 2.x of Apollo. For the 1.0.4 installation please refer to the installation guide found at http://genomearchitect.readthedocs.io/en/1.0.4/
Contents:
- Pre-requisites
- Quick-start Developer’s guide
- Setup guide
- Apollo Configuration
- Main configuration
- JBrowse Plugins
- Translation tables
- Logging configuration
- Canned Elements
- Search tools
- Data adapters
- Supported annotation types
- Apache / Nginx configuration
- Adding extra tabs
- Upgrading existing instances
- Register admin in configuration
- Other authentication strategies
- URL modifications
- Phone Home
- Only owners can edit
- Chado Export Configuration
- Data generation pipeline
- How to contribute code to Apollo
- Troubleshooting guide
- Migration guide
- Permissions guide
- Automated testing architecture
- Architecture notes
- Command line tools
- Web Service API
- Example Build Script on Unix with MySQL